PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G075100.3
Common NamePOPTR_0005s07660g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CAMTA
Protein Properties Length: 992aa    MW: 111514 Da    PI: 6.0993
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G075100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1144.33.4e-4528634118
                CG-1  34 pksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                         p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+e+n++fqrr+yw+Leeel++ivlvhy+evk
  Potri.005G075100.3   2 PPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSVDVLHCYYAHGEDNENFQRRSYWMLEEELSHIVLVHYREVK 86 
                         89********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143765.809191IPR005559CG-1 DNA-binding domain
SMARTSM010762.6E-46186IPR005559CG-1 DNA-binding domain
PfamPF038591.9E-38284IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.2E-5409496IPR013783Immunoglobulin-like fold
PfamPF018331.2E-5410493IPR002909IPT domain
SuperFamilySSF812962.18E-15410496IPR014756Immunoglobulin E-set
PROSITE profilePS5029719.041581714IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-17590706IPR020683Ankyrin repeat-containing domain
CDDcd002048.52E-13591702No hitNo description
SuperFamilySSF484032.49E-16597704IPR020683Ankyrin repeat-containing domain
PfamPF127964.1E-7615705IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.778643675IPR002110Ankyrin repeat
SMARTSM002480.011643672IPR002110Ankyrin repeat
SMARTSM00248930682711IPR002110Ankyrin repeat
SuperFamilySSF525409.82E-8813867IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000152816838IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.206819846IPR000048IQ motif, EF-hand binding site
PfamPF006120.0041819837IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0039839861IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.597840864IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4842861IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 992 aa     Download sequence    Send to blast
MPPSGSLFLF DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKSGSVDVLH CYYAHGEDNE  60
NFQRRSYWML EEELSHIVLV HYREVKGTRT NFNRIKEYEE PIPYSQETKD MMPNSEMDTS  120
VSSSFRSNGY QVPTGTTDST SMNSALASEY EDAESGPFFF HFLCITSSRF NSFLEVQRPA  180
MEKMDTGTSI PYDHMLFSSI LVIHKNLHNN TCILIGGYQG KMPAVPVMEF ISPAQVDTAK  240
DTIGTEPASE PQKVFDLPSW EDVLENCSRG IESVPFQTTL LSQVDTVGVI PKQEDILEKF  300
LANSFDKRQG MPANSDHGMT LDEKSIYSTS MKQHILDDSR TEGLKKLDSF TRWMSKELED  360
VDQPHLQSSS GTYWISAESE NVVDADNPSH GHLDTYTLGP SLSQDQLFSI IDFSPNWAYA  420
GTEIKILVMG RFLKSREEAE NFKWSIMFGE VEVPAETIAD GILRCTTPSH KAGRVPFYVT  480
CSNRVACSEV REFEYRLSHV QDITYNYINI ATEDLHMRLA KLLSLSSAFP SKYDSSDVDE  540
ISQLSNKISS LLKEGNETWD QMLKLTSLEG FSSEKLKDQL LQKALKEQLH EWLLQKVAEG  600
GKGPSVLDEG GQGVLHFAAA LGYEWALEPT IVAGVSVNFR DVNGWTALHW AASYGRERTV  660
ASLIHLGAAP GALTDPTPKY PTGRTPADLA SANGHKGISG FLAESALSAH LSSLNLEKQD  720
GDAAESSGIP ASLTVSDCNE TPVKDADIPI GLSLKDSLAA VCNATQAAAR IHQVFRVQSF  780
QKKQLKEYGD DKFGMSHERA LSLIAVKSQK AGQYDEPVHA AIRIQNKFRG WKGRKEFLII  840
RQRIVKIQAH VRGHQVRKNY RKIIWSVGIL DKIILRWRRK GSGLRGFKSE ALTEGSSMQV  900
VSTKDDDDDF LKEGRKQTEE RSQIALARVK SMHQHPEARE QYHRLRNVVA EIQETKAMYE  960
WANNSEAMVE FDDLINLETL WDGDTFLPTD S*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G075100.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022800.10.0PREDICTED: calmodulin-binding transcription activator 3-like isoform X2
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLA0A2K1ZRQ80.0A0A2K1ZRQ8_POPTR; Uncharacterized protein
STRINGPOPTR_0005s07660.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]