PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G085200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 207aa    MW: 22873.2 Da    PI: 6.5043
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G085200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.94.8e-29116174159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +dDg++WrKYG+K+vk+s++pr+YY+C+s gC vkk+ver+ ed  +v++tY g Hnhe
  Potri.005G085200.1 116 MDDGFKWRKYGKKSVKNSPHPRNYYKCSSGGCDVKKRVERDGEDSAYVITTYDGVHNHE 174
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-31104176IPR003657WRKY domain
SuperFamilySSF1182908.63E-27109176IPR003657WRKY domain
PROSITE profilePS5081130.194111176IPR003657WRKY domain
SMARTSM007746.8E-33116175IPR003657WRKY domain
PfamPF031065.5E-23117174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSLPLSTTCQ PPLLYAMNFP EINPNHDFSY FNEGFDPPAT EFQVSDYLML DDGFGEDNSS  60
SQSMASSEQV PSGSSSGYSG ATSRNNSIKC KNGVKKNKIE GGHRVAFRTK SELEVMDDGF  120
KWRKYGKKSV KNSPHPRNYY KCSSGGCDVK KRVERDGEDS AYVITTYDGV HNHESPCMVY  180
YNNQIPLAVP NAWTFQDSSP HSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-25104176274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G085200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456867.11e-154probable WRKY transcription factor 51
SwissprotQ93WU97e-48WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBLA0A2K2ADP41e-153A0A2K2ADP4_POPTR; Uncharacterized protein
STRINGPOPTR_0005s08720.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-45WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Yan C, et al.
    Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis.
    Mol. Cell, 2018. 70(1): p. 136-149.e7
    [PMID:29625034]