PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G086400.1
Common NamePOPTR_0005s08860g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 224aa    MW: 25473.7 Da    PI: 9.1577
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G086400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.2e-32146204159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Potri.005G086400.1 146 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHS 204
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-33131204IPR003657WRKY domain
SuperFamilySSF1182901.14E-28139205IPR003657WRKY domain
PROSITE profilePS5081129.585141206IPR003657WRKY domain
SMARTSM007744.0E-37146205IPR003657WRKY domain
PfamPF031061.8E-25147203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MATTSQATLN QQPLFEDQEM PTQMGFFSFP PHLTYPQSAS CHQSLKGFII PPSLAADAPS  60
TTNLTETLLL SSVTNKQRED TIASDLGGPH LLSLQRSSAN LWGINNKVEE DNHLGVSTIK  120
LKKIKARRKV REPRFCFKTL SDVDVLDDGY KWRKYGQKVV KNTQHPRSYY RCTQDNCRVK  180
KRVERLAEDP RMVITTYEGR HAHSPSHDLE ESQTPSQFNN FFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-27137203874Probable WRKY transcription factor 4
2lex_A4e-27137203874Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.169820.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G086400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1452930.0EF145293.1 Populus trichocarpa clone WS01122_O17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456370.11e-148probable WRKY transcription factor 13
TrEMBLA0A2K2ADS21e-168A0A2K2ADS2_POPTR; Uncharacterized protein
STRINGPOPTR_0007s06930.11e-139(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.13e-59WRKY DNA-binding protein 13
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]