PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G095400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 233aa    MW: 26031.8 Da    PI: 10.0928
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G095400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-1257103455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h + Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Potri.005G095400.1  57 SHAIEERNRREKLSQRFIALSAVVPGL-----KKMDKASVLGDAIKYLKYLQ 103
                         899************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.74553102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1657115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-1057107No hitNo description
SuperFamilySSF474592.75E-1657117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-1057103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-1359108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MTKLSIIKPH KTLPVHPLFP LKSALIRGQQ NSQKLLNRLR LLPPGTKKIA ATSKSPSHAI  60
EERNRREKLS QRFIALSAVV PGLKKMDKAS VLGDAIKYLK YLQERVKTLE EQAAKKTMES  120
VVFVKKSLVC IADDSSSSTD ENSAGGCRDY PLPEIEITVS DEDVLIRILC ENQKGCLMKI  180
LTEMEKLHLK VINSIVMPFG NYTLDVTIVA QMDVDFSMTL KDLVKNLRRA LM*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G095400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2167700.0AC216770.1 Populus trichocarpa clone POP051-A24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456919.11e-133transcription factor bHLH25 isoform X2
SwissprotQ9T0723e-65BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A3N7EXB71e-132A0A3N7EXB7_POPTR; Uncharacterized protein
STRINGPOPTR_0005s09810.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-67bHLH family protein