PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G098200.3
Common NamePOPTR_0005s10100g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 252aa    MW: 28169.8 Da    PI: 9.0635
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G098200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.95.2e-3378253129
                 NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          + kewyf+s+rd+kyatg r+nrat+sgyWkatgkd++vl+ kg+lvg++ktLvfy+grapkg++tdWvmhe+rle
  Potri.005G098200.3   7 VGGKEWYFYSQRDRKYATGLRTNRATASGYWKATGKDRHVLR-KGTLVGMRKTLVFYQGRAPKGKRTDWVMHEFRLE 82 
                         4679*************************************9.999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.591105IPR003441NAC domain
SuperFamilySSF1019414.84E-395105IPR003441NAC domain
PfamPF023654.8E-151281IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAEAARVGGK EWYFYSQRDR KYATGLRTNR ATASGYWKAT GKDRHVLRKG TLVGMRKTLV  60
FYQGRAPKGK RTDWVMHEFR LEGPLGPPKI SSDKEDWVLC RVFYKSNREV VAKPSMRSCN  120
DDTGSSSLPA LLDSYITYEQ TQPNLDEHEQ VPCFSIFSQN QTSQNLLAPY TTQMEAPNAP  180
AKCTSPFGKV PMDITTPLDS FSCDTKVLKT VLNNLTKMES YGNLKGSPSL GEGSSESYIS  240
EVGMSSLWNH Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-31110762167NO APICAL MERISTEM PROTEIN
1ut4_B1e-31110762167NO APICAL MERISTEM PROTEIN
1ut7_A1e-31110762167NO APICAL MERISTEM PROTEIN
1ut7_B1e-31110762167NO APICAL MERISTEM PROTEIN
3swm_A2e-31110765170NAC domain-containing protein 19
3swm_B2e-31110765170NAC domain-containing protein 19
3swm_C2e-31110765170NAC domain-containing protein 19
3swm_D2e-31110765170NAC domain-containing protein 19
3swp_A2e-31110765170NAC domain-containing protein 19
3swp_B2e-31110765170NAC domain-containing protein 19
3swp_C2e-31110765170NAC domain-containing protein 19
3swp_D2e-31110765170NAC domain-containing protein 19
4dul_A1e-31110762167NAC domain-containing protein 19
4dul_B1e-31110762167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G098200.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456646.10.0NAC domain-containing protein 21/22 isoform X3
SwissprotQ84TE67e-88NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A3N7F4G50.0A0A3N7F4G5_POPTR; Uncharacterized protein
STRINGPOPTR_0005s10100.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.11e-84NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]