PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G103200.1
Common NamePOPTR_0005s10610g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 254aa    MW: 29443.8 Da    PI: 7.6251
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G103200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.72.6e-4171293128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                         pGfrFhPt+eel+++yL+k v g+++   ++i  ++iy++ePwdLp   k +e+ewyf ++r++      r++r+t++gyWkatg+d+++ 
  Potri.005G103200.1   7 PGFRFHPTEEELLDFYLTKTVLGQDTA--DIIGFLNIYNHEPWDLPGLSKIGEREWYFLVHRESVL---GRPRRTTEKGYWKATGSDRPIR 92 
                         9***********************943..68***************8778899********99976...59*******************9 PP

                 NAM  94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +    ++l g +kt+vfy+grap+g+ktdWvm+eyrl
  Potri.005G103200.1  93 CLmdPKRLLGHRKTMVFYRGRAPRGSKTDWVMNEYRL 129
                         87667888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100548.895147IPR003441NAC domain
SuperFamilySSF1019412.62E-475147IPR003441NAC domain
PfamPF023652.8E-237129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEFDGLPGFR FHPTEEELLD FYLTKTVLGQ DTADIIGFLN IYNHEPWDLP GLSKIGEREW  60
YFLVHRESVL GRPRRTTEKG YWKATGSDRP IRCLMDPKRL LGHRKTMVFY RGRAPRGSKT  120
DWVMNEYRLP SNCYLSKEIV LCKVYRKATS LKVLEQRAAI EEIVRAPNVT SLSPPMQGNF  180
SFYDHQKSFN KFLLEQNNVV HKVEGVTVIE EEEDNKIGYP SQIMGVGPIK EHYSELLSPK  240
LVLDWTMDSL WPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-35714717168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.125220.0bud| catkin
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G103200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307224.30.0NAC domain-containing protein 22
SwissprotQ10S651e-71NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A2K2AER30.0A0A2K2AER3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s10610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62143251
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.12e-84NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]