PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G112000.1
Common NamePOPTR_0005s11410g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 255aa    MW: 28992.2 Da    PI: 9.3557
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G112000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.3e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd++lv +++ +G g+W++ ++  g+ R++k+c++rw +yl
  Potri.005G112000.1 14 KGAWTREEDKRLVAYIQAHGEGCWRSLPKSAGLLRCGKSCRLRWINYL 61
                        79******************************99************97 PP
2Myb_DNA-binding574.4e-1867120147
                         TSSS-HHHHHHHHHHHHHTTTT........-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg........tWktIartmgkgRtlkqcksrwqky 47 
                         rg++T+eEdel+++++ +lG++        +W++Ia +++ gRt++++k++w+++
  Potri.005G112000.1  67 RGNFTEEEDELIIKLHSLLGNNnkvfillsRWSLIAGRLP-GRTDNEIKNYWNTH 120
                         89**************************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.399961IPR017930Myb domain
SuperFamilySSF466891.26E-2613117IPR009057Homeodomain-like
SMARTSM007171.2E-121363IPR001005SANT/Myb domain
PfamPF002495.1E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-231568IPR009057Homeodomain-like
CDDcd001671.16E-91661No hitNo description
PROSITE profilePS5129423.90762125IPR017930Myb domain
SMARTSM007177.3E-1466123IPR001005SANT/Myb domain
PfamPF002498.6E-1667120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2669125IPR009057Homeodomain-like
CDDcd001672.13E-1269121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRSPCCERA HTNKGAWTRE EDKRLVAYIQ AHGEGCWRSL PKSAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIK LHSLLGNNNK VFILLSRWSL IAGRLPGRTD NEIKNYWNTH  120
IRKKLLSRGI DPSTHRPINE SAIDSMTTSL GAVLKEEITS GFGCKNQKNP NGEKCQELNL  180
ELRICPPYQH PTQSMESIGR KIMCFYCSLG LKNSKDCSCS NDSDDFLVMK NGALDYRRQK  240
AKRDSEVGLF IVNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271312526128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236243RRQKAKRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.125200.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G112000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383085.21e-180myb-related protein 308
SwissprotP813931e-102MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A2K2AF671e-178A0A2K2AF67_POPTR; Uncharacterized protein
STRINGPOPTR_0005s11410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-92myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]