PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G114700.2
Common NamePOPTR_0005s11680g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WOX
Protein Properties Length: 259aa    MW: 29460.1 Da    PI: 6.7887
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G114700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-193393357
                        --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        +R+t+t++q+++L+el++    r p+ +e+++++++l    +++ ++V++WFqN++a+e++
  Potri.005G114700.2 33 TRWTPTTDQIRILKELYYIkgVRSPNGAEIQQISARLrkygKIEGKNVFYWFQNHKARERQ 93
                        8****************95469*************************************97 PP
2Wus_type_Homeobox111.35.2e-363195265
   Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        ++tRWtPt++Qi+iL+ely+ +G+r+Pn +eiq+i+a+L++yGkie+kNVfyWFQN+kaRerqk+
  Potri.005G114700.2 31 TSTRWTPTTDQIRILKELYYiKGVRSPNGAEIQQISARLRKYGKIEGKNVFYWFQNHKARERQKK 95
                        789****************99******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-112897IPR009057Homeodomain-like
PROSITE profilePS5007110.092894IPR001356Homeobox domain
SMARTSM003891.3E-43098IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-63393IPR009057Homeodomain-like
CDDcd000865.58E-63395No hitNo description
PfamPF000468.7E-173393IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEPQQQQHQN QQQPNEDNNG GAKGNFICRQ TSTRWTPTTD QIRILKELYY IKGVRSPNGA  60
EIQQISARLR KYGKIEGKNV FYWFQNHKAR ERQKKRFTND VPTQQRTTLK PEDYYSYKYS  120
GFSSASSSSN TGAVTVGQAD NYGYGSVTMQ EKKNWDCSVP AGGESMNNIN YGSRGGIYPY  180
SSSYTVFDQD QEAAEKIETL PLFPMHGEDI STSFNINNVN PDFYYSSWYG SDDYGNATTS  240
RTSLELSLYS YNGQQQDY*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In the active shoot meristem, it is specifically expressed in a small cell group underneath the presume position of stem cells. {ECO:0000269|PubMed:12208843}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G114700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2320630.0FJ232063.1 Populus tomentosa wuschel 1 mRNA, complete cds.
GenBankKR4933830.0KR493383.1 Populus tomentosa Wuschela mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383114.11e-174protein WUSCHEL
SwissprotQ8LL117e-62WUS_PETHY; Protein WUSCHEL
TrEMBLA0A172CMI00.0A0A172CMI0_POPTO; Wuschela
STRINGPOPTR_0005s11680.11e-173(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-37WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]