PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G117100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family DBB
Protein Properties Length: 194aa    MW: 21465.4 Da    PI: 7.8811
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G117100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.93e-06433534
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                         C+ +e+  ++ fC  ++  lC  C  + H
  Potri.005G117100.1  4 LCDACESAFAIVFCAADEAALCLACDKKVH 33
                        7*************************9998 PP
2zf-B_box33.58.7e-115291237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                        e ++C+ +e+ ++ ++Ce++++ lC +C ++ H g    H
  Potri.005G117100.1 52 EVPRCDICENAPAFFYCETDGSSLCLQCDMTVHVGgkrtH 91
                        789******************************6655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.755147IPR000315B-box-type zinc finger
SMARTSM003361.1E-5147IPR000315B-box-type zinc finger
CDDcd000212.05E-4345No hitNo description
SuperFamilySSF578451.1E-54887No hitNo description
SMARTSM003362.8E-125196IPR000315B-box-type zinc finger
PROSITE profilePS501199.3855196IPR000315B-box-type zinc finger
PfamPF006431.3E-85291IPR000315B-box-type zinc finger
CDDcd000217.01E-85484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MRTLCDACES AFAIVFCAAD EAALCLACDK KVHMCNKLAS RHVRVGLANP SEVPRCDICE  60
NAPAFFYCET DGSSLCLQCD MTVHVGGKRT HGRYLLLRQK IEFPGNQPQP EDPAPQPMYP  120
GETRRGQNRP QKATSGENRQ NRQASPVLMS VTNSDGHDKV DKNMIDLNMK PHRIHEHASN  180
NQVIVFSSSL RLN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.154790.0leaf
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G117100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1465970.0EF146597.1 Populus trichocarpa clone WS01210_C06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383135.11e-136B-box zinc finger protein 18
SwissprotC0SVM52e-72BBX19_ARATH; B-box zinc finger protein 19
TrEMBLU5GHK51e-135U5GHK5_POPTR; Uncharacterized protein
STRINGPOPTR_0005s11900.11e-135(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-64DBB family protein