PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G126000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 359aa    MW: 38135.6 Da    PI: 5.2487
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G126000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.61.2e-22259321163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L++ N  L++el++l++e+ klkse+
  Potri.005G126000.1 259 ERELKRQKRKQSNRESARRSRLRKQAECEELQVRVENLSNDNCNLRDELQSLSEECNKLKSEN 321
                         89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.2E-29797IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1702.3E-20253319No hitNo description
SMARTSM003387.4E-18259323IPR004827Basic-leucine zipper domain
PfamPF001706.5E-21259321IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.829261320IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.09E-11262319No hitNo description
CDDcd147029.33E-25264315No hitNo description
PROSITE patternPS000360266281IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MHTQMYRDSH SDKHTNPSSL CLQEIPATPS YPDWSNSVQA YYGAGATPPP FFASTVASPT  60
PHPYIWGSQH PLIPPYGTPV PYPALYPAGG VYAHPNMAPT PNSAPANTEL EGKVPDGKDH  120
ASAKKAKGTS GGKAGESGKA ISDSGNDGAS QSAESGTDGS SDSSDENTNQ QENAANKKGS  180
FNQMLADANA QSNSAGANIQ TSVPGKPVGS MPATNLNIGM DLWNASPDAS GTTKMRPNPS  240
GASSGIVPAG MPEQWIQDER ELKRQKRKQS NRESARRSRL RKQAECEELQ VRVENLSNDN  300
CNLRDELQSL SEECNKLKSE NDFIKEELTR LYGPEAVANL EQTNPVSDPK SHGGEGDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275281RRSRLRK
2275282RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.3130.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in both light and dark grown leaves.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G126000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1481920.0EF148192.1 Populus trichocarpa clone WS0128_J07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456161.10.0G-box-binding factor 1
RefseqXP_024456162.10.0G-box-binding factor 1
SwissprotP427741e-119GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A2K2AFX40.0A0A2K2AFX4_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59333450
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-109G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]