PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G129500.3
Common NamePOPTR_0005s13780g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 826aa    MW: 89423.9 Da    PI: 7.1433
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G129500.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-095846211954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Potri.005G129500.3 584 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 621
                         664459******************************88 PP
2BELL122.81.4e-39444515172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +r e+q+kk+kLls+l+eVdkrY++y+eq+q+v++sF+ ++g g+a pYt+lA+ka+SrhFrcLk+ai+ q+
  Potri.005G129500.3 444 DRIEHQRKKVKLLSMLDEVDKRYNHYCEQMQMVVNSFDLIMGFGAAVPYTALAQKAMSRHFRCLKEAISAQL 515
                         589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.8E-81376513IPR006563POX domain
PfamPF075262.2E-51381512IPR006563POX domain
PROSITE profilePS5007112.568562625IPR001356Homeobox domain
SMARTSM003891.2E-9565629IPR001356Homeobox domain
CDDcd000864.28E-13565626No hitNo description
SuperFamilySSF466893.98E-17567632IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28568631IPR009057Homeodomain-like
PfamPF059204.2E-18582621IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MGIATPPFPP ILPHSKTHQL ISPNIKSNPS NHNSMSQDYH QGIFSFSHGG FDRSSVSLQE  60
HNQQQQQQQQ HDIAQQIRRD KHRIQSDYEP PPPALVGIEE EEEESSGLPV YETAGMLSEM  120
FNFPPAGGPA AAVDLLDQPV HSNYRTQPRQ QQPVTTNDWY NSNNRQSMVV GGLGIGDSKS  180
NSNRDSLAQH QHQISGINAD SAAAMQLFLM NPSQPRSPQS PSPSHHQTPP STSSTLHMLL  240
PNPSSSLQGY IAVSGGGFGA TSVISPPQFT WVPDSSHEGG NTGAPLNNPS EISGVVEGQG  300
LSLSLSSSLQ HLEAAKAEEL RMESGGLLYY NQGAGGSSSA QYYKNLGGHQ HHQALHLQGG  360
VGQNHHQVHV GFGSSLGVVN VLRNSKYVRA AQELLEEFCS VGRGQFKKSK FGRQNTNPSS  420
NNNPGGGGGS SSSTKDPLPL SAADRIEHQR KKVKLLSMLD EVDKRYNHYC EQMQMVVNSF  480
DLIMGFGAAV PYTALAQKAM SRHFRCLKEA ISAQLKHSCE LVGDKDGAGT SAITKGETPR  540
LKLLEQSLRQ QRAFNQMGMM EQEAWRPQRG LPERSVNILR AWLFEHFLHP YPSDADKHLL  600
ARQTGLSRNQ VSNWFINARV RLWKPMVEEM YQQEAKEEEP GAEDRERKPT SSNNNSNNRG  660
LAQTPTPTTT TTGSSAPAAT TTAPTATTIP SGKRSEINAN EKDPSLLAIN RQCFSENQAK  720
LSTSSSTTII TPTNITSTTE VAPQPHAGQS FHDFADDTCR QGSIVTADYG TTSGNANAGA  780
DHIGSTLIRF GTSTAGDVSL TLGLRHAGNV PDKSPTFSVR DFGGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16571629563Homeobox protein Meis2
3k2a_B2e-16571629563Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G129500.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306443.20.0BEL1-like homeodomain protein 4
RefseqXP_024456686.10.0BEL1-like homeodomain protein 4
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLB9H6970.0B9H697_POPTR; Uncharacterized protein
STRINGPOPTR_0005s13780.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-148BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]