PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G137600.2
Common NamePOPTR_0005s18090g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 474aa    MW: 53107.1 Da    PI: 9.1702
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G137600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.2e-19105195199
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         f+k l++s+v +  ++ lp +f+++h  +    ++t+tl+de g+++++k+i  k++    l++GW++F+ a++L egD +vF+l+g+ + 
  Potri.005G137600.2 105 FVKSLVRSHVASCFWMGLPGTFCRAHlPS---VDTTVTLQDECGKEFKMKYIAYKTG----LSAGWRQFCVAHQLFEGDALVFQLTGSCT- 187
                         89************************533...3569***************666665....9**********************998433. PP

                         ..EEEEE-S CS
                  B3  91 elvvkvfrk 99 
                          l+v ++r+
  Potri.005G137600.2 188 -LKVYIIRA 195
                         .69999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2098196IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-2399196IPR015300DNA-binding pseudobarrel domain
CDDcd100178.23E-24103194No hitNo description
SMARTSM010192.1E-20105196IPR003340B3 DNA binding domain
PROSITE profilePS5086313.014105196IPR003340B3 DNA binding domain
PfamPF023624.3E-17105195IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MSGRVKKEVE ETDFIKPLLF NKEQLKSVKD GKQKSPMEAT EKHLKIKRRY SDPKLKFVIS  60
GHAGKCIWQN KAPVQRSTTV GDGKSSAMIR AEEVQSNLEP AFPSFVKSLV RSHVASCFWM  120
GLPGTFCRAH LPSVDTTVTL QDECGKEFKM KYIAYKTGLS AGWRQFCVAH QLFEGDALVF  180
QLTGSCTLKV YIIRANDLTE VDGALCLLNL DAQIKQNVAD SAEMKTAACK SSKRKRPRSL  240
PQAVVQKKNK KSGQLRLSVP QAGQPAEQSE NDSEEVGSEV LEGFKLSLPA VHFKDIKSFE  300
DFNILVDGLV LDSELSEDIR NKYYKLCCNQ NAFLHDNLIK GVNFKLIAGI ISETVNIADA  360
MRACTLTTSR DKFATWDKAL KASELFGMNV GFLRARLSRL LSLAFDSEGA TKTRRYLEAR  420
FERVLTEDEI KSLEAKLVEL KEAYERYGAN VERLKSKAEG YDLKFQEQVL APW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G137600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024457977.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLA0A2K2AGF90.0A0A2K2AGF9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s18090.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-37B3 family protein