PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G140600.1

Common Name

POPTR_0005s18395g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 41aa MW: 4790.36 Da PI: 10.1241

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G140600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	39.6	1.9e-12	8	40	5	37
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqd 37 + h ++hTkv+g +RR+R++ +caa +F+ +d Potri.005G140600.1 8 TLIHQDRHTKVEGHGRRIRIPTTCAAGIFQFTD 40 5669***************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	9.627	11	41	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.6E-8	12	41	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 41 aa Download sequence Send to blast
HYDNNNKTLI HQDRHTKVEG HGRRIRIPTT CAAGIFQFTD K

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G140600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K2AGK4	2e-22	A0A2K2AGK4_POPTR; Uncharacterized protein (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	6e-12	TCP family protein

Link Out ? help Back to Top
Phytozome	Potri.005G140600.1
Entrez Gene	18099551