PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G145500.1

Common Name

POPTR_0005s18900g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 243aa MW: 26199.5 Da PI: 6.012

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G145500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.7	1.4e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++pe++r+ +++sl++eA+ r+ +Pv+Gavg++++++++ Potri.005G145500.1 2 SCNGCRVLRKGCSENCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISSVPEDQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWH 92 6**************************************************************************************** PP DUF260 87 leqlkaelall 97 ++q+++e++l+ Potri.005G145500.1 93 VCQAAVETVLR 103 ***998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.967	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.3E-27	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISSVPEDQR 60 PSLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PDLLTGGGSP 120 SSSPPSDEAS EFEVACTDIW KLQDPNPNPI HHSRFSNSRS RVSSKRKGTE EPMVVNMRHD 180 DLDLLLTPST SQKGFAEICR PGTPSMNSEE SVTTNATCFD SAGFGDQYGN GGGETKLLNL 240 FL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G145500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF148830	0.0	EF148830.1 Populus trichocarpa x Populus deltoides clone WS0138_O01 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002306497.1	1e-180	LOB domain-containing protein 37
Swissprot	Q9SN23	2e-89	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	B9H6M3	1e-179	B9H6M3_POPTR; Uncharacterized protein
STRING	POPTR_0005s18900.1	1e-180	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	2e-82	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Potri.005G145500.1
Entrez Gene	7476419