PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G158100.1
Common NamePOPTR_0005s17690g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 366aa    MW: 40433.9 Da    PI: 4.8926
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G158100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.00033143531054
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r R ++i++ ++ L+ l+P      ++  + + +Le+A++Y+ksL
  Potri.005G158100.1 314 RMRKENIRETMSILQNLIPGG----KG-KDAIVVLEEAIQYLKSL 353
                         88999**************97....23.46799**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.309304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-6314359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-4314354No hitNo description
SuperFamilySSF474597.07E-7314359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGEDWGSLFP QQRFNWQSPN SNYLDASLAF GQQNTLPLLM DPNTNMVFTN GIGYPFTELL  60
PSQASQENEP RGWFHGLPHF RQALMPPSNS VHKERRPRLD TVLKEKLPTA PHDNKEDNMP  120
KAVSGCDQKR LLVFDQSGDQ TTLIFSSGVG TPVQCLKSWI PKPTVGFDLN REIPGAKGQN  180
FHLGPIANDE FVEDDGIDMH EDTEELNALL YSDDGSVCSE DEVTSTGHSP STMTTHDRRD  240
WFDGSAEEVA SSNGSNKKRK LFDGGYTDAP SLKDTATSVK PTRCFGHEED VESRCDNGTN  300
SLSHEMGSES GNKRMRKENI RETMSILQNL IPGGKGKDAI VVLEEAIQYL KSLKFKAKAL  360
GLDAP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G158100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306548.10.0transcription factor bHLH145
TrEMBLB9H6X20.0B9H6X2_POPTR; Uncharacterized protein
STRINGPOPTR_0005s17690.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF821946
Representative plantOGRP576834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.15e-08ROOT HAIR DEFECTIVE 6-LIKE 2