PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G169600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 35aa    MW: 4047.64 Da    PI: 12.2436
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G169600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.41.3e-111134124
                        S---SHHHHHHHHHHHHHHHHHHH CS
              SRF-TF  1 krienksnrqvtfskRrngilKKA 24
                        krie+++ rqvtfskRrng +KKA
  Potri.005G169600.1 11 KRIESNTDRQVTFSKRRNGFIKKA 34
                        79*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.301334IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-11434IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-11525IPR002100Transcription factor, MADS-box
PfamPF003192.0E-91234IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-112534IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 35 aa     Download sequence    Send to blast
SRNGRLQLEI KRIESNTDRQ VTFSKRRNGF IKKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G169600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164119e-32AC216411.1 Populus trichocarpa clone POP034-D16, complete sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-11AGAMOUS-like 104