PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G170500.4
Common NamePOPTR_0005s16400g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 248aa    MW: 28084.6 Da    PI: 7.421
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G170500.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.71.1e-1274115243
                         XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                         +++k +rr+++NReAAr+sR+RKka++++Le    +L +  +
  Potri.005G170500.4  74 PADKIQRRLAQNREAARKSRLRKKAYVQQLESSRMKLAQLEQ 115
                         57999**************************86555544443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-970121No hitNo description
SMARTSM003389.1E-773133IPR004827Basic-leucine zipper domain
PfamPF001701.5E-975116IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.15175119IPR004827Basic-leucine zipper domain
CDDcd147084.42E-2277129No hitNo description
SuperFamilySSF579591.05E-777119No hitNo description
PROSITE patternPS0003608095IPR004827Basic-leucine zipper domain
PfamPF141443.1E-29163236IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSSTSTQIAA LRGMGIYEPF NQISSWAHAF RDDGSLNIGP STIVQVDAGL DDKSEHVSHE  60
SMEPYRSDQE AHKPADKIQR RLAQNREAAR KSRLRKKAYV QQLESSRMKL AQLEQELERA  120
RHQGAYLGSA SNSSHLGFSG TVNPGIAAFE MEYGHWVEEQ HKQISELRKA LQAHITDIEL  180
RILVENGLNH YNNLFRMKAD AAKADVFYLI SGKWRTSVER FFQWIGGFRP SELLNVSLIP  240
YNLLLED*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.110530.0bud| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00247DAPTransfer from AT1G77920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G170500.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1450130.0EF145013.1 Populus trichocarpa clone WS0111_I20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306598.11e-175transcription factor TGA7
SwissprotQ93ZE21e-101TGA7_ARATH; Transcription factor TGA7
TrEMBLA0A385ZA141e-174A0A385ZA14_9ROSI; BZIP1 (Fragment)
TrEMBLB9H7801e-174B9H780_POPTR; BZIP family protein
STRINGPOPTR_0005s16400.11e-175(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.11e-103bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]