PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G176900.1
Common NamePOPTR_0005s19930g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 296aa    MW: 32014.1 Da    PI: 9.194
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G176900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82.1e-0996121227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         k +lCr +   G+C+y ++C+FaHg+
  Potri.005G176900.1  96 KKALCRVWEDLGHCRYAANCQFAHGK 121
                         789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.22E-794126IPR000571Zinc finger, CCCH-type
SMARTSM003560.001595121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.12795122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-1095125IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-596121IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MESLNKSVNK DSMLVTYLRG GAGSPIISPG GDRFSSNYQR NRSGSSRSPL SPLENVKAPM  60
MAEDEVLVMD GVLVSSVVGS GSSSNSSSSS GKSVHKKALC RVWEDLGHCR YAANCQFAHG  120
KEELHPTHFP IKNKAAVHTC NSYVTSPRSS PYVPKCRILH PAMTKAAVAA NQTAFSKIPG  180
YTSISPVTIS SEKFSKNSTT PFSTPDHFLR TYISTRPEHC NKSSAANIKS DSRMVFTATI  240
SSDYWSPQDD GIEIALPHQT DKCISRAEVD AYIHSVLYGP ATKKRLPVFS EFCPG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G176900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306630.20.0zinc finger protein zfs1
RefseqXP_024456816.10.0zinc finger protein zfs1
RefseqXP_024456817.10.0zinc finger protein zfs1
TrEMBLB9H7E00.0B9H7E0_POPTR; Uncharacterized protein
STRINGPOPTR_0005s19930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117801416
Representative plantOGRP1212144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-07C3H family protein