PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G208600.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 524aa    MW: 59207 Da    PI: 6.5155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G208600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.9e-14370416455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Potri.005G208600.2 370 NHVLAERRRREKLNERFIMLRSLVPFV-----TKMDKASILGDTIEYVKQLR 416
                         7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-569191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.561366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-19368435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-15370420No hitNo description
Gene3DG3DSA:4.10.280.102.2E-20370433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-11370415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-18372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MATPPSSRLQ TMLQAAVQSV QWTYSLFWQM CPQQGILVWG DGYYNGPIKT RKTVQPMEVT  60
TEEASLQRSQ QLRELYDSLS IGETNQPARR PCAALSPEDL TETEWFYLMC VSFSFPPGGG  120
LPGKAYARRR HVWLTGANEI DSKTFSRAIL AKSARVQTVV CIPLLDGVVE FGTTDKVQED  180
LGLIQHVKTF FSDHHHRHLT PPKPALSEHS TSSPATSSHD HPPEPSELMQ LEMSEDIRLG  240
SPDDGSNNLD SDFPLTGPPP LEDLAQEDTH YSQTISTILQ SQPVWLAAEP SSIAYEARYH  300
QSAFSRWTNR SDHLFHVSVE TTSQWLLKYI LFSVPHLHSK SREDNSPKSR DGEAASRFRK  360
GTPQDELSAN HVLAERRRRE KLNERFIMLR SLVPFVTKMD KASILGDTIE YVKQLRQKIQ  420
DLETRNKQME SEQRPRSLET SVEVSIIESD ALLELECGFR EGLLLDIMQM LRELRIETIA  480
VQSSLNNGIF AGELRAKVKE NVNGKKVSIV EVKRAIHKII PHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-2391929193Transcription factor MYC3
4rqw_B8e-2391929193Transcription factor MYC3
4rs9_A8e-2391929193Transcription factor MYC3
4yz6_A8e-2391929193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374379ERRRRE
2375380RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G208600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9097570.0KJ909757.1 Populus tremula x Populus tremuloides clone INRA 353-38 basic helix-loop-helix transcription factor (bHLH131) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032731.10.0PREDICTED: basic helix-loop-helix protein A isoform X2
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A2I4KKD80.0A0A2I4KKD8_POPTR; BHLH family protein
TrEMBLA0A2K2AJW00.0A0A2K2AJW0_POPTR; Uncharacterized protein
STRINGXP_010070223.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-179bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]