PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G221100.3
Common NamePOPTR_0005s24240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 467aa    MW: 51448.2 Da    PI: 6.7192
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G221100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11321367455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  Potri.005G221100.3 321 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITFITDLQ 367
                         799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-4548232IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.259317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.21E-14320371No hitNo description
SuperFamilySSF474591.03E-17320388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9321367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16321387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-14323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MGDKFWVNGE KGMVESVLGV EACEFLITSA SKNLLNDLVS PPVSLGVQQG LVQLVEGFNW  60
NYAIFWHASG LKTGGSILVW GDGICRDPKG QGIGDGSSSG DGKSEGAEKR KEVKKRVLQK  120
LHMCFNGPDD DNFAASVDEV SDVEMFYLTS MYFTFRCDST YGPGEAYQSG RSIWALGMPS  180
CLGHYQLRSV LARSAGFQTV VFLPVKSGVL ELGSVKSIPE QHDFVEKARS IFGASNTAQA  240
KAAPKIFGRE LSLGSSKSRS ISINFSPKVE DELIFTSEPY TMQAMSTDQD YPKDDLSPQG  300
DERKPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI  360
TFITDLQKKI RVLETERGVV NNNQKQLPVP EIDFQPRQDD AVVRASCPME SHPVSTIIET  420
FREHQITAQD CNVSVEGDKI VHTFSIRTQG GAADQLKEKL EAALSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-28315382269Transcription factor MYC2
5gnj_B4e-28315382269Transcription factor MYC2
5gnj_E4e-28315382269Transcription factor MYC2
5gnj_F4e-28315382269Transcription factor MYC2
5gnj_G4e-28315382269Transcription factor MYC2
5gnj_I4e-28315382269Transcription factor MYC2
5gnj_M4e-28315382269Transcription factor MYC2
5gnj_N4e-28315382269Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302310RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G221100.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024457616.10.0transcription factor bHLH3
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A2K2AKL70.0A0A2K2AKL7_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24240.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-173bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]