PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G221400.1
Common NamePOPTR_0005s24280g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 197aa    MW: 22529.6 Da    PI: 8.7487
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G221400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000293860123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F +   L  H+++H
  Potri.005G221400.1 38 YSCSFCKRQFISAQALGGHMNVH 60
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-63564No hitNo description
Gene3DG3DSA:3.30.160.606.9E-43662IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.973865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MVKKFPQGSS TVKDKWEKNN AIFQGEHSSV FSWPQRNYSC SFCKRQFISA QALGGHMNVH  60
RRDRAKLRQL PSWFFKCPKY PTTNPNPDHL LSSSSKFLPY PDDRTHDHSS YLSSFSSPCC  120
REKKSVVECH ESKDLTKKKN NAGAVFGVGE LKKNFAQECD QLEVLRRNEI INLDMEMGCE  180
DPKEVLDLEL RLGLLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G221400.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306830.31e-146zinc finger protein 11
TrEMBLA0A2K2AKL51e-145A0A2K2AKL5_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24280.11e-144(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.12e-25zinc finger protein 11