PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G231300.1
Common NamePOPTR_0005s25290g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 156aa    MW: 18035.1 Da    PI: 6.5145
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G231300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.46.5e-133189563
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                        ++ +r+q+NRe+ArrsR +K++ ++ L   v +L + N +   +++  ++++ ++++e+
  Potri.005G231300.1 31 RKRKRMQSNRESARRSRMKKQKHLDDLMAQVTQLRKDNNQILTTINVTTQHYLNVEAEN 89
                        6789******************************************9999999988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.8E-182791IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.1852992IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.3E-102977No hitNo description
SuperFamilySSF579596.19E-123183No hitNo description
PfamPF001701.2E-93183IPR004827Basic-leucine zipper domain
CDDcd147026.67E-203282No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MASSSGDSSG FTQLQNSGSE ENTQMMLVDQ RKRKRMQSNR ESARRSRMKK QKHLDDLMAQ  60
VTQLRKDNNQ ILTTINVTTQ HYLNVEAENS ILRAQMMELN HRLDSLNEIL NYINTSNGIF  120
ENDHHEDLPD HSFMNPSNLF YLNQPIMASP DLFQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13051RKRKRMQSNRESARRSRMKKQK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.106331e-146bud| catkin| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G231300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306888.11e-111bZIP transcription factor 44
SwissprotC0Z2L52e-54BZP44_ARATH; bZIP transcription factor 44
TrEMBLB9H4F31e-110B9H4F3_POPTR; BZIP family protein
STRINGPOPTR_0005s25290.11e-111(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Representative plantOGRP5511678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.19e-57basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]