PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G232000.2
Common NamePOPTR_0005s25350g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 444aa    MW: 49845 Da    PI: 6.7101
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G232000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox314.4e-103654021954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+++e+  LA+++gLt++qV++WF N R +
  Potri.005G232000.2 365 FEHflHPYPNESEKLMLASQTGLTKNQVSNWFINARVR 402
                         554459******************************88 PP
2BELL1071.2e-34227298172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         e++e+q k+akL+ lleeV+ rY++y++q++ v+ssFe++aglg+ak+Yt+lAl+a+S+hF +L+dai++qi
  Potri.005G232000.2 227 EKHEVQLKIAKLIALLEEVEGRYEKYYHQMEEVVSSFEEMAGLGAAKSYTALALQAMSKHFCNLRDAIVSQI 298
                         689********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.4E-33160296IPR006563POX domain
PfamPF075267.4E-40166295IPR006563POX domain
PROSITE profilePS5007112.147343406IPR001356Homeobox domain
SMARTSM003898.0E-10346410IPR001356Homeobox domain
CDDcd000861.34E-10346407No hitNo description
SuperFamilySSF466895.13E-18351414IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-28351412IPR009057Homeodomain-like
PfamPF059202.8E-17363402IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MVSQDSSSNS ASSMLHQFIF SDSITSQNQF QNQNFDALVG SNTFPQSHGV LPSIQSLEER  60
MSRSIDLVQA PSVAQESEIS HTRHLMSLLG AANETNRQAQ RLSLSLGSHM LVPQVQYRQR  120
SFNSDLMSEQ ANNDYSLIGS GFPSSPASLS RRSTTAYGTE SFAVAIENSR YLKPAQSLLE  180
ETVHVSCKAV EISNEKYVRR LIRCRGSLGL SSELKAELWG NGLVQAEKHE VQLKIAKLIA  240
LLEEVEGRYE KYYHQMEEVV SSFEEMAGLG AAKSYTALAL QAMSKHFCNL RDAIVSQINE  300
TRRKFSQDLP RTSSGLSPLS FFDKETKHNR MSLQQLGMTQ SQRQAWRPIR GLPETSVAIL  360
RSWLFEHFLH PYPNESEKLM LASQTGLTKN QVSNWFINAR VRLWKPMIEE MYKVEFADSS  420
EDSNPLPGSS FITREGVTDH SED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-17352410563Homeobox protein Meis2
3k2a_B7e-17352410563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G232000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456830.10.0BEL1-like homeodomain protein 11
RefseqXP_024456831.10.0BEL1-like homeodomain protein 11
RefseqXP_024456832.10.0BEL1-like homeodomain protein 11
RefseqXP_024456833.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-102BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A3N7GHG60.0A0A3N7GHG6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s25350.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-104BEL1-like homeodomain 11