PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G234200.2

Common Name

POPTR_0005s25560g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SRS

Protein Properties

Length: 295aa MW: 32256.4 Da PI: 8.2122

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G234200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	191	4.2e-59	94	225	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssa 94 g+++CqdCGnqakkdC h RCRtCCksrgf C+thvkstWv+aakrrerqqqlaa+++++++ +++++ ++ + Potri.005G234200.2 94 GGMNCQDCGNQAKKDCPHLRCRTCCKSRGFPCNTHVKSTWVSAAKRRERQQQLAALQQHNQQ------QEQHQ------------QQFLGE 166 789*************************************************98554422......11111............122334 PP DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++k++ e + +P+ev+s+a+frcv+vs++dd++++laYqtav+igGhvf+GiLydqG++ Potri.005G234200.2 167 NPKRQRENHAFPPEVNSDAIFRCVKVSAMDDADDQLAYQTAVNIGGHVFRGILYDQGAD 225 4566778889*********************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.5E-57	95	225	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.4E-25	97	139	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.6E-25	176	223	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MAGWFYLGGG EGPSRKQDQE KEDNNSSLFL YRPSNEEIYN NKGFELWPQY YHQQQNMNSF 60 SFGVGPSRRS LSDDHSSRSG FSLTRQGGGG GLRGGMNCQD CGNQAKKDCP HLRCRTCCKS 120 RGFPCNTHVK STWVSAAKRR ERQQQLAALQ QHNQQQEQHQ QQFLGENPKR QRENHAFPPE 180 VNSDAIFRCV KVSAMDDADD QLAYQTAVNI GGHVFRGILY DQGADGRYAS TGGESSSSGA 240 QQLLITAAGT STTGTTTNTS NPAAGNTLLD PSSLYPAPLN AFIAGTQFFA PPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G234200.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024456842.1	1e-171	protein SHI RELATED SEQUENCE 5
Swissprot	Q9LQZ5	8e-83	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A2K2ALD7	1e-170	A0A2K2ALD7_POPTR; Uncharacterized protein
STRING	POPTR_0005s25560.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	2e-62	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Potri.005G234200.2
Entrez Gene	7493939

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]