PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G243400.1
Common NamePOPTR_0005s26480g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 302aa    MW: 32967.5 Da    PI: 9.4269
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G243400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.39.1e-10202225427
                         XCHHHCHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkae 27 
                         ++r +r++kNRe+A rsR+RK+++
  Potri.005G243400.1 202 DRRHKRMIKNRESAARSRARKQES 225
                         6899******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.2E-11202277No hitNo description
SuperFamilySSF579597.43E-6203231No hitNo description
PfamPF001704.0E-7203225IPR004827Basic-leucine zipper domain
CDDcd147071.38E-20203286No hitNo description
PROSITE patternPS000360206221IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MWSSPGANID NNNTSNSKVS GNSPSKCFSS TCSSPSPPSP SPPIPNQSMN GASMEEVWDD  60
INLASLHDHS NTNTSSNTNH HSFNGMVFQD FLARPSNKDT STRAASKEPS SGGGNSFLKN  120
SLGPPPATML SLNSGSDHFH YLESSNTVPV RPNPQMHSHA NGGTISFDSS LDSPFDALGS  180
SSVFLSICKK RPQENGDVSG GDRRHKRMIK NRESAARSRA RKQESGSPFE NLFLVKFNDY  240
RMLMFYLLLI LQAYTVELER EAAHLAQENA KLRRQQERFL AAAPAQLPKK NTLYRTSTAP  300
F*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.112336e-42bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G243400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2886160.0AF288616.2 Populus x generosa clone 545-5183 basic leucine zipper transcription factor (PTBF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307742.20.0protein FD isoform X1
TrEMBLQ9FQ010.0Q9FQ01_9ROSI; Basic leucine zipper transcription factor
STRINGPOPTR_0005s26480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37553252
Representative plantOGRP8739610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35900.11e-42bZIP family protein