PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G252800.1

Common Name

POPTR_0005s27410g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WOX

Protein Properties

Length: 217aa MW: 24642.9 Da PI: 5.9628

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G252800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.4	7.8e-21	77	137	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++ qle+Le+ F++ n +p ++++++++k+l +++e++V++WFqNrRa+ k+ Potri.005G252800.1 77 RQRWTPKPAQLEILEQIFKQcNATPGRQKIKDITKELaqhgQISETNVYNWFQNRRARSKR 137 89***************99************************************97 PP
2	Wus_type_Homeobox	96.3	2.5e-31	76	139	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+p Q++iLe+++k+ tP +++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Potri.005G252800.1 76 SRQRWTPKPAQLEILEQIFKQCNATPGRQKIKDITKELAQHGQISETNVYNWFQNRRARSKRKQ 139 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-18	69	140	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-17	70	141	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.673	73	138	IPR001356	Homeobox domain
SMART	SM00389	2.7E-13	75	142	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-18	77	137	IPR001356	Homeobox domain
CDD	cd00086	3.28E-14	77	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MEDGKFQNGG GLGVKVMTDE QMEMLRKQIS VYATICEQLV EMHKALSVHQ DFAGMRLGNP 60 YFCDPLLSSS VHKIGSRQRW TPKPAQLEIL EQIFKQCNAT PGRQKIKDIT KELAQHGQIS 120 ETNVYNWFQN RRARSKRKQS ALLPNSGESE VETEIEPFKE KKTKPEDNQP DEDATPVSDH 180 MYLHSPDIGI DQLVGKMESP GSCIPYWQLE QYDLFG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	138	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G252800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF982713	0.0	KF982713.1 Populus tomentosa WOX13b (WOX13b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002306983.1	1e-163	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	4e-67	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	B9H5J3	1e-162	B9H5J3_POPTR; Uncharacterized protein
STRING	POPTR_0005s27410.1	1e-162	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93
Representative plant	OGRP1873	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-64	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Potri.005G252800.1
Entrez Gene	7485645

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]