PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.006G005500.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YB

Protein Properties

Length: 215aa MW: 23236.9 Da PI: 5.7651

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.006G005500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	177.7	1.1e-55	55	150	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 reqd++lPianvsrimkk+lPanakiskd ketvqecvsefisf+t+easdkcqrekrkt+ngddllwa++tlGfedy+eplk+yl+k+re Potri.006G005500.1 55 REQDKLLPIANVSRIMKKALPANAKISKDGKETVQECVSEFISFITGEASDKCQREKRKTVNGDDLLWAMTTLGFEDYAEPLKIYLQKFRE 145 89*************************************************************************************** PP NF-YB 93 legek 97 +ege+ Potri.006G005500.1 146 TEGER 150 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.7E-52	50	161	IPR009072	Histone-fold
SuperFamily	SSF47113	2.79E-38	57	159	IPR009072	Histone-fold
Pfam	PF00808	6.3E-26	61	124	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.3E-21	88	106	No hit	No description
PROSITE pattern	PS00685	0	91	107	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.3E-21	107	125	No hit	No description
PRINTS	PR00615	4.3E-21	126	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MYGPKQTISI SISISIYIYI KESQAQESLG FMADSDNESG GQNNSNTNYS ETSSREQDKL 60 LPIANVSRIM KKALPANAKI SKDGKETVQE CVSEFISFIT GEASDKCQRE KRKTVNGDDL 120 LWAMTTLGFE DYAEPLKIYL QKFRETEGER TAAMGTVRQG DQRDGAVVNS GDSGGGFGGS 180 GGNVYGGMQS SMMMMGHHPL HQGNMYGSAS GRPK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-47	55	145	2	92	Transcription factor HapC (Eurofung)
4g92_B	2e-47	55	145	2	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.12515	0.0	bud\| catkin

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.006G005500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC210129	1e-146	AC210129.1 Populus trichocarpa clone POP009-F11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002308762.2	1e-135	nuclear transcription factor Y subunit B-3
Swissprot	O23310	4e-70	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A2K1ZUS6	1e-158	A0A2K1ZUS6_POPTR; Uncharacterized protein
STRING	POPTR_0006s00730.1	1e-134	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150
Representative plant	OGRP168	17	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	4e-70	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Potri.006G005500.1

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]