PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G021000.1
Common NamePOPTR_0006s02180g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 209aa    MW: 22040.6 Da    PI: 4.9876
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G021000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.2e-164493255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         ++GVr+++ +g+Wv+eIr+p+    +  r++lg+f  +e+Aa a++ a+++l+g
  Potri.006G021000.1 44 VFRGVRRRS-SGKWVSEIREPK----KpNRIWLGTFPNPEMAAVAYDVAALALKG 93
                        59****888.8*********94....468***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.8E-2944103IPR001471AP2/ERF domain
PfamPF008475.6E-94493IPR001471AP2/ERF domain
SMARTSM003801.6E-3244107IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1944103IPR016177DNA-binding domain
PROSITE profilePS5103221.99744101IPR001471AP2/ERF domain
PRINTSPR003672.1E-104556IPR001471AP2/ERF domain
CDDcd000186.26E-3045103No hitNo description
PRINTSPR003672.1E-1083103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MQYYQQSNTS SADSSSSSGS SRTASAAAAA AGAIAPKVSG HHHVFRGVRR RSSGKWVSEI  60
REPKKPNRIW LGTFPNPEMA AVAYDVAALA LKGQDAELNF PNSAASLPVP ASTSPRDIQA  120
AAASAAAAIG AAKDALGIRS MGDTNQMEQE IRPMVNDQFV DEDLMFDMPN VLVNMAEAML  180
LSPPRLDIAG DDATAYDSTG DQNLWKFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1438103874Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G021000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559370.0EF155937.1 Populus trichocarpa TINY-like protein (TINYL18) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307914.11e-151ethylene-responsive transcription factor ERF024
SwissprotQ9SJR06e-52ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLB9HD631e-149B9HD63_POPTR; Uncharacterized protein
STRINGPOPTR_0006s02180.11e-150(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.12e-36ERF family protein