PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G021400.1
Common NamePOPTR_0006s02220g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 445aa    MW: 48108.6 Da    PI: 6.1382
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G021400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3759.7e-115824413374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          lLl+cAe+v+ ++l+ a+ lL ++ el++p g++ +R+ ayf+ AL+ r+++s  ++y+ l +++ ++++s++ ++al+ ++ +sP++kf
  Potri.006G021400.1  82 GLLLQCAECVAMDNLNGATDLLPEIAELSTPFGSSPERVGAYFAHALQVRVVSSILGTYSPLVSKSVTRTQSQKLFNALQSYNSISPLVKF 172
                         58***************************************************************************************** PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                         sh+taNqaI +a++ge+rvH+iD+di+qGlQWp L++ LasRp++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef++l  k
  Potri.006G021400.1 173 SHFTANQAIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRPRKIRSMRITGFGS----SSELLESTGRRLADFASSLGLPFEFHPLEGK 259
                         ********************************************************....9**************************8666 PP

                GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                           +   l++L v+p+Ea++V++++  h l+d ++s  +    +Lkl+  l+Pk+++ veq+++h ++sFl rf+eal+yysalfd+l  +l
  Potri.006G021400.1 260 IGNVTGLSQLGVRPREAIVVHWMH--HCLYDVTGSDLE----TLKLLALLRPKLITTVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGL 343
                         6666789****************9..888877888777....**********************.789*********************** PP

                GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                         + +s er++vE++l+g ei+n+va  g +r+ + + +e+W + l+++GF+pv+l+ + a+qa lll +++++gy++ ee+g+l lgWkd +
  Potri.006G021400.1 344 GVDSVERHMVEQQLFGCEIRNIVAVGGPKRTGEVK-VERWGDELRRSGFRPVSLQGNPAAQAGLLLGMFPWRGYTLVEENGCLKLGWKDLS 433
                         *****************************998887.9****************************************************** PP

                GRAS 367 LvsvSaWr 374
                         L+++SaW+
  Potri.006G021400.1 434 LLTASAWQ 441
                         *******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.20354421IPR005202Transcription factor GRAS
PfamPF035143.3E-11282441IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MLQSLIPQSP INSTNPNNSS SSPMKSKRAA ADLTVGESSG DDPSSKRVSY ENPTTEIVSS  60
TNLVEGGGGD DGGESSGLRL LGLLLQCAEC VAMDNLNGAT DLLPEIAELS TPFGSSPERV  120
GAYFAHALQV RVVSSILGTY SPLVSKSVTR TQSQKLFNAL QSYNSISPLV KFSHFTANQA  180
IFQALDGEDR VHVIDLDIMQ GLQWPGLFHI LASRPRKIRS MRITGFGSSS ELLESTGRRL  240
ADFASSLGLP FEFHPLEGKI GNVTGLSQLG VRPREAIVVH WMHHCLYDVT GSDLETLKLL  300
ALLRPKLITT VEQDLSHGGS FLGRFVEALH YYSALFDALG DGLGVDSVER HMVEQQLFGC  360
EIRNIVAVGG PKRTGEVKVE RWGDELRRSG FRPVSLQGNP AAQAGLLLGM FPWRGYTLVE  420
ENGCLKLGWK DLSLLTASAW QPSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1638644224379Protein SCARECROW
5b3h_D1e-1638644224379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.162950.0bud| catkin
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G021400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308822.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLB9HD660.0B9HD66_POPTR; Uncharacterized protein
STRINGPOPTR_0006s02220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Representative plantOGRP21831437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]