PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.006G025800.1

Common Name

POPTR_0006s02670g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 268aa MW: 29837.5 Da PI: 5.2654

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.006G025800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.4	8.3e-15	197	240	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 ++++r++kNRe+A rsR+R++a++ eLe kv Le+eN++L+k+ Potri.006G025800.1 197 RKQKRMIKNRESAARSRARRQAYTHELEIKVSHLEEENERLRKQ 240 689***************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00041	4.4E-6	118	133	IPR001630	cAMP response element binding (CREB) protein
Gene3D	G3DSA:1.20.5.170	1.4E-14	189	240	No hit	No description
PRINTS	PR00041	4.4E-6	192	208	IPR001630	cAMP response element binding (CREB) protein
SMART	SM00338	1.1E-11	193	251	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.266	195	240	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.38E-10	197	241	No hit	No description
Pfam	PF00170	3.0E-12	197	240	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	200	215	IPR004827	Basic-leucine zipper domain
PRINTS	PR00041	4.4E-6	210	230	IPR001630	cAMP response element binding (CREB) protein
PRINTS	PR00041	4.4E-6	230	247	IPR001630	cAMP response element binding (CREB) protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MGSQGGSFEE ENPESLMGQG SLCSLTLDEV QNQLGNLGKP LGSMNLDDLL KSVDNVGAWS 60 APMNRQGSLT LSRDLSKKTV EEVWRDIQQL DKKDDDNPGR NAPFGEMTLE DFLVKAGVVT 120 ESTPVQQQES NQWMQFQLPS VQQPVYQNNM MTVVDAAYPD SQMNISPSSL MGTLSDTQTP 180 GRKRVAPGDV VEKTVERKQK RMIKNRESAA RSRARRQAYT HELEIKVSHL EEENERLRKQ 240 EKAEKVLPCA PPPEPKSQLR RTSSAPL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.006G025800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002307931.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
Refseq	XP_024459059.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
Swissprot	Q9LES3	5e-98	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	B9HDH3	0.0	B9HDH3_POPTR; Uncharacterized protein
STRING	POPTR_0006s02670.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105
Representative plant	OGRP540	15	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	5e-92	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Potri.006G025800.1
Entrez Gene	7495654

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]