PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G037100.1
Common NamePOPTR_0006s03550g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 241aa    MW: 27232 Da    PI: 8.4811
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G037100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.5e-1370116354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+E+rRR+riNs +++Lr llP +      K +Ka+ L k+v+ +++L
  Potri.006G037100.1  70 KNHKEAEKRRRERINSHLDKLRGLLPCN-----SKTDKASLLAKVVQRVREL 116
                         58*************************8.....7************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.35867116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-1070116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.22E-1170119No hitNo description
SuperFamilySSF474596.28E-1471129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1371123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1173122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.0082154218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MQPENCQENS QLYRFLTENG MINVGPYGFP AAMQTLCTSS STSYHNSNYH FERSVITDMT  60
PEDRALAALK NHKEAEKRRR ERINSHLDKL RGLLPCNSKT DKASLLAKVV QRVRELKQQT  120
SELPGLESFP SETDEVTVLS GEYSSDGQLI FKASLCCEDR SDLMPDLIEI LKSLHLKTLK  180
AEMVTLGGRI RNVLIIAADK DHSVESVHFL QNALKSLLER SNSSERSKRR RVLDRKLVIQ  240
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227231KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.131340.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G037100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1448040.0EF144804.1 Populus trichocarpa clone WS01118_H20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307967.21e-178transcription factor bHLH106
RefseqXP_011040758.11e-178PREDICTED: transcription factor bHLH106-like
SwissprotO806747e-82BH106_ARATH; Transcription factor bHLH106
TrEMBLB9H8T81e-176B9H8T8_POPTR; BHLH family protein
STRINGPOPTR_0006s03550.11e-177(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.16e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]