PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G037200.1
Common NamePOPTR_0006s03560g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 253aa    MW: 28481.3 Da    PI: 8.723
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G037200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.45.9e-1472123155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++ +hn++Er RR++i+s ++ Lr+llP a   ++ Kls  +++ +A +Y+ +Lq
  Potri.006G037200.1  72 KKLSHNANERDRRKKIKSLYSSLRSLLPAA---DQMKLSVPATVSRALKYLPELQ 123
                         6789**************************...******************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.26271122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-1172123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1472140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-1472140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-977128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MLELSPATLF STFGWPVEEP TSHERNYLSF RDSETQESLI TQFPPSQPQI VKLDRSPSFT  60
AYSGSVDPIM VKKLSHNANE RDRRKKIKSL YSSLRSLLPA ADQMKLSVPA TVSRALKYLP  120
ELQQQVERLV QRKEELLSKL SKQGGINIHQ ENQRNDTVYS SLSSVSASQL SDKEVVVHIS  180
TYKNHKSPLS EILLTLEEDG LVLKNSSSFE SFGDRVFYNL HLQVMEGTYT LDSEAMRAKL  240
VSLSVKRESS SL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G037200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2826510.0GU282651.1 Populus balsamifera isolate INU03 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826520.0GU282652.1 Populus balsamifera isolate FRE01 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826540.0GU282654.1 Populus balsamifera isolate KUU07 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826560.0GU282656.1 Populus balsamifera isolate MGR10 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826580.0GU282658.1 Populus balsamifera isolate STO11 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826590.0GU282659.1 Populus balsamifera isolate STO11 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826600.0GU282660.1 Populus balsamifera isolate HAY07 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826610.0GU282661.1 Populus balsamifera isolate HAY07 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826620.0GU282662.1 Populus balsamifera isolate GIL14 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826630.0GU282663.1 Populus balsamifera isolate GIL14 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826640.0GU282664.1 Populus balsamifera isolate LOV02 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826650.0GU282665.1 Populus balsamifera isolate LOV02 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826660.0GU282666.1 Populus balsamifera isolate POR11 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826670.0GU282667.1 Populus balsamifera isolate POR11 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826680.0GU282668.1 Populus balsamifera isolate RNA13 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826690.0GU282669.1 Populus balsamifera isolate RNA13 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826700.0GU282670.1 Populus balsamifera isolate STL13 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826710.0GU282671.1 Populus balsamifera isolate STL13 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826720.0GU282672.1 Populus balsamifera isolate WHR03 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826730.0GU282673.1 Populus balsamifera isolate WHR03 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308882.30.0transcription factor ORG2
TrEMBLA0A2K1ZWD50.0A0A2K1ZWD5_POPTR; Uncharacterized protein
STRINGPOPTR_0006s03560.11e-162(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Representative plantOGRP28261129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-52bHLH family protein