PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G037600.1
Common NamePOPTR_0006s03590g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 251aa    MW: 28468.2 Da    PI: 6.3985
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G037600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.5e-1470122155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++ +hn+ Er RR++iNs ++ Lr+llP  +   + kKls  ++  ++ +YI +Lq
  Potri.006G037600.1  70 KKLNHNASERDRRKKINSLYSSLRSLLPAsD---GMKKLSIPSTISRVLKYIPELQ 122
                         6789*************************55...8888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.66569121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-670126No hitNo description
PfamPF000108.7E-1270122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-1570139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1470137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-1075127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MLEFSPTTLF STFGWPLEEP ISHEQNYSFR DCETPGSFTH FPPSQPNIRE LDHSTSFTAY  60
SGSGDPNMVK KLNHNASERD RRKKINSLYS SLRSLLPASD GMKKLSIPST ISRVLKYIPE  120
LQQQVERQIQ RKEELLSNLS RQDDLIHQEN QRKDTMYSSL SSVSASRLGD REVVVQISTC  180
KVLKSPISEI LLNLEENGLV LINSSSFESF GGNVFYHLHL QVMEGNCTLE CEALNEKLLS  240
LCTKRETFFL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G037600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307969.30.0transcription factor ORG2
TrEMBLA0A2K1ZWD10.0A0A2K1ZWD1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s03590.11e-127(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Representative plantOGRP28261129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.16e-60bHLH family protein