PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G039000.3
Common NamePOPTR_0006s03720g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 403aa    MW: 44496.8 Da    PI: 7.3503
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G039000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42e-10117159547
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                         k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L+k
  Potri.006G039000.3 117 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQK 159
                         788*************************988888887777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-8113176IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.438115159IPR004827Basic-leucine zipper domain
PfamPF001701.5E-7117159IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.5E-7117160No hitNo description
Gene3DG3DSA:1.20.5.1706.9E-8118162No hitNo description
PROSITE patternPS000360120135IPR004827Basic-leucine zipper domain
PfamPF141442.3E-31199274IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDSIFNQLKS SSQAIGADVQ FGTLNKSLAS SDINLSAAIV GSQTLPLQKE VQVNPVSIHS  60
NHPENWGETN MAEASPRTDT STDDTDEKNQ RFERGQLVAI AASDSSDKSK ERAGDQKTLR  120
RLAQNREAAR KSRLRKKAYV QQLESSRLKL TQLEQELQKA RQQGIFISSS GDQTHSMSGN  180
GALAFDAEYA RWLEEHNRQI SELRAAVNSH AGDTELRTIV DNVASHFSDV FRLKGTAAKA  240
DVFHILSGMW KTPAERCFMW IGGFRSSELL KLLVNQLEPL TEQQLMGIYN LQQSSQQAED  300
ALSQGMEALQ QSLAETLANG NPGSSGSSGN VANYMGQMAM AMGKLGTLEG FLRQADNLRQ  360
QTLEQMHRIL TTRQSARALL AIHDYFSRLR ALSSLWLARP QE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.2080.0bud| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G039000.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1951200.0EF195120.1 Populus tremula x Populus alba TGA transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459464.10.0transcription factor TGA2.3 isoform X1
RefseqXP_024459465.10.0transcription factor TGA2.3 isoform X2
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLB9H9250.0B9H925_POPTR; BZIP family protein
STRINGPOPTR_0006s03720.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-145bZIP family protein