PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G049200.1
Common NamePOPTR_0006s04770g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 227aa    MW: 26377 Da    PI: 9.0585
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G049200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.83.5e-33191102102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y ++ed +++++isw+ +g+ fvv+++ ef++++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF ++ F+kg++e
  Potri.006G049200.1  19 FLLKTYMLVEDLATDDVISWNGEGTGFVVWQPAEFSRDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNDMFRKGERE 100
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Potri.006G049200.1 101 LLRQIRRRKA 110
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.4E-5115108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.7E-3515108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.62E-3215108IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-2919108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-171942IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-175769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-177082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MADDKGLLEY VRKSTPPPFL LKTYMLVEDL ATDDVISWNG EGTGFVVWQP AEFSRDLLPT  60
LFKHSNFSSF VRQLNTYGFR KVATSRWEFC NDMFRKGERE LLRQIRRRKA WTNKQQPIAP  120
LIQVAPQEFE EDQRSSSTLS SSEYTSLVDE NKRLKKENGV LSTELTSMKR KCKELLDLVA  180
KNAHLEKEEE DERPKLFGVR LEVEGEREKK RKRAEIRESA TILLSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-191410815120Heat shock factor protein 1
5d8k_B3e-19171083105Heat shock factor protein 2
5d8l_B3e-19171083105Heat shock factor protein 2
5d8l_D3e-19171083105Heat shock factor protein 2
5d8l_F3e-19171083105Heat shock factor protein 2
5d8l_H3e-19171083105Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G049200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2333220.0CU233322.1 Populus EST from severe drought-stressed opposite wood.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308023.11e-166heat stress transcription factor B-3
SwissprotO222303e-71HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLB9H9T11e-164B9H9T1_POPTR; HSF family protein
STRINGPOPTR_0006s04770.11e-165(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.13e-66heat shock transcription factor B3