PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G057200.1
Common NamePOPTR_0006s05600g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 355aa    MW: 39105.4 Da    PI: 5.5986
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G057200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH283.8e-09187234455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++iN+++  L+el+P +    +k    a +L + +++++sLq
  Potri.006G057200.1 187 SHSLAERARREKINQRMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 234
                         8*************************9....888999999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-15181252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.96E-9181238No hitNo description
PROSITE profilePS5088814.672183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-14183251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6187234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-8189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDLTTASGAR SGPELDETGL DSFQLGEDIR HLITAPSENA SSFIALLELP ANQAVELLHS  60
DSGQKQYPNL TFPSNTSAIF SVFNGGSNST DSSPVPSNSS SKDLEKASAV KCEPLETGSY  120
LDSSHPLVSD PTVDNSAPNA RPSSKRKERE KKVKAASKKS KTESSQQEED MLPYVHVRAR  180
RGQATDSHSL AERARREKIN QRMKLLQELV PGCNKISGTA LVLDEIINHV QSLQCQVEFL  240
SMRLAAVNPR IDFNLDSMLA AESGSLIDSN FPGMVMPLMW PEAEVNGNRH QFQQHWQFDA  300
LHQPIWGREE DSHNFITPEN SLLSYDSSAN SGKKQKNERN QRPSLSHDVC LSYE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.34750.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G057200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458405.10.0transcription factor bHLH48
SwissprotQ3EAI11e-87BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A2K1ZXD70.0A0A2K1ZXD7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.26e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]