PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G057600.3
Common NamePOPTR_0006s05640g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 231aa    MW: 25709.1 Da    PI: 10.1083
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G057600.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12158203655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+     +k  + a++L +Av YIk+Lq
  Potri.006G057600.3 158 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVVYIKDLQ 203
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.589152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-15155215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-10156205No hitNo description
Gene3DG3DSA:4.10.280.104.3E-14157214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-12158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-9158203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MKGVGNYSGL NGTNREASPR LQSQLSFSSR VPSSLGLLSQ ISEIGSESME AGSPDSGKLS  60
SVSVDSRFYS SHGFPYGSWN DSHLSENFSS MKREQENGNL FSNAQNGELG NRAHVLSHHL  120
SLPKTAMEMV AMEKFLHFQD SVPCKIRAKR GCATHPRSIA ERVRRTRISE RMRKLQELVP  180
NMDKQTNTAD MLDLAVVYIK DLQKQYKTLS DNRANCKCLS KQKPVQNRIV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G057600.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381041.11e-169transcription factor bHLH130 isoform X1
SwissprotQ66GR37e-79BH130_ARATH; Transcription factor bHLH130
TrEMBLB9N6W01e-168B9N6W0_POPTR; BHLH family protein
STRINGPOPTR_0006s05640.11e-168(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]