PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G066400.1
Common NamePOPTR_0006s06530g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 234aa    MW: 27122.5 Da    PI: 8.9964
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G066400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.7e-171360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W +eEd++l+ +v+ +G g+W+t++++ g+ R++k+c++rw +yl
  Potri.006G066400.1 13 KGLWKPEEDLILKTYVETHGEGNWSTVSKRSGLMRCGKSCRLRWKNYL 60
                        678*******************************************97 PP
2Myb_DNA-binding49.78.4e-1666111148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg ++++E++ +++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  Potri.006G066400.1  66 RGGMSQDEEDMIIRMHKLLGNR-WSLIAGRLP-GRTDNDVKNYWNTHL 111
                         67799*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.711860IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-22963IPR009057Homeodomain-like
SuperFamilySSF466891.68E-2811107IPR009057Homeodomain-like
SMARTSM007171.7E-131262IPR001005SANT/Myb domain
PfamPF002493.5E-151360IPR001005SANT/Myb domain
CDDcd001671.53E-101660No hitNo description
PROSITE profilePS5129424.15361115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2264114IPR009057Homeodomain-like
SMARTSM007174.7E-1565113IPR001005SANT/Myb domain
PfamPF002494.8E-1466111IPR001005SANT/Myb domain
CDDcd001679.86E-1169111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MESKGAKPHE FKKGLWKPEE DLILKTYVET HGEGNWSTVS KRSGLMRCGK SCRLRWKNYL  60
RPNIRRGGMS QDEEDMIIRM HKLLGNRWSL IAGRLPGRTD NDVKNYWNTH LNKRCPSRKR  120
KTIDSKPDQN DNNTKKQYRS KRIRSLSNSQ PTCNTSPIGS TEELEGKNQE KEERSAVISD  180
AWIQQDAQSM NSCIESPMVL HNNATFFFED DPFLTYWDSF DMFESLGCGG DYW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-231011524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116121SRKRKT
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in the trichomes of new leaves. {ECO:0000269|PubMed:24803498}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G066400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308975.11e-176transcription factor WER
SwissprotQ9LTF71e-61MYB82_ARATH; Transcription factor MYB82
TrEMBLB9HA931e-175B9HA93_POPTR; Uncharacterized protein
STRINGPOPTR_0006s06530.11e-175(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135452026
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.12e-63myb domain protein 82