PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.006G067800.1

Common Name

POPTR_0006s06700g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

YABBY

Protein Properties

Length: 189aa MW: 21234 Da PI: 8.2184

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.006G067800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	206.1	1.3e-63	9	161	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt++ svn+a a q l+ +++++ + + ++++ ++ s+s+ + Potri.006G067800.1 9 PNEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNIWSVNMAAAFQSLSWQDQVQ-------ASNYNSHDYRID-----LGSSSKCN 87 579*********************************************999999732.......223333333333.....22333333 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ ++ + + v++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Potri.006G067800.1 88 NKISMRTPAANIVTQERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 161 3333344555556666679***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.3E-71	9	161	IPR006780	YABBY protein
SuperFamily	SSF47095	5.11E-8	106	154	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-4	109	155	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MSSCIDAVPN EQLCYIPCNF CNIVLAVSVP CSSLFDIVTV RCGHCTNIWS VNMAAAFQSL 60 SWQDQVQASN YNSHDYRIDL GSSSKCNNKI SMRTPAANIV TQERVVNRPP EKRQRVPSAY 120 NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLETNNQTK VDDGSEKRLM 180 SRSALQNN*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.006G067800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002308074.1	1e-140	axial regulator YABBY 5
Swissprot	Q8GW46	2e-86	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	B9HAJ0	1e-138	B9HAJ0_POPTR; Uncharacterized protein
STRING	POPTR_0006s06700.1	1e-139	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112
Representative plant	OGRP2210	12	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	8e-89	YABBY family protein

Link Out ? help Back to Top
Phytozome	Potri.006G067800.1
Entrez Gene	7485469

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]