PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G074600.1
Common NamePOPTR_0006s07410g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 248aa    MW: 28303.7 Da    PI: 8.0482
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G074600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.8e-145799855
                        HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                         Er+RR+++N+++ eLr  +Pk +      Kl+Ka++L+ A+ YI++Lq
  Potri.006G074600.1 57 SERKRRKKLNDKLLELRGAVPKiS------KLDKASTLKDAIVYIQDLQ 99
                        6*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2314998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-1751114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-1755115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-1555104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.25E-1156103No hitNo description
PfamPF000101.1E-115799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
METIENIAAD QNYCEMTKMF SNDELKSWTM HQAFTQSYEY SSSPEGATST ASKTIVSERK  60
RRKKLNDKLL ELRGAVPKIS KLDKASTLKD AIVYIQDLQE QERRLQAEIM ELESKSLKKD  120
PGFDFEQELP VLLRPKKTRY DQIYDHRAPI SYPIKVHELR VNSMGEKTLL VSLTCSKARD  180
AMIKICEIFE SMKLKIITAN VAIVSGMVKK TVLIEADMEE KDNLKIKIER AFSAESDPDS  240
HLSMQSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15764ERKRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G074600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460552.10.0transcription factor bHLH35 isoform X1
TrEMBLA0A2K1ZYF10.0A0A2K1ZYF1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s07410.11e-180(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-52bHLH family protein