PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G074800.1
Common NamePOPTR_0006s07430g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 251aa    MW: 28574.5 Da    PI: 6.3183
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G074800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.1e-1052100255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         r+++ + E + R+++N+++  Lre +Pk +      Kl+Ka+i + A+ YI++Lq
  Potri.006G074800.1  52 RTKNIALETNKRKELNDKLLALREAVPKiS------KLDKASIIKDAIGYIQDLQ 100
                         788899999*******************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1449114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.7385099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-1252115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-852100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.37E-952104No hitNo description
SMARTSM003534.6E-1056105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDIIENIGEY QNYWETSLFW NEELNYSWAT NQQSNLGYHA SSLPEGTASP IRTKNIALET  60
NKRKELNDKL LALREAVPKI SKLDKASIIK DAIGYIQDLQ EQERILQAEI REHESKRLKK  120
HPDSGFEQEL PDLLRSERTR YDQIYHHSLG RSSCPIQVHE VSYSLPLAIT SMGENTLLVS  180
LACNKTTDAM TRICEVFESL KLKIITANAT VLSGMIKKTV VIEVDEEEKE HLKIKIERAV  240
SALRSPHTVQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G074800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458299.11e-178transcription factor bHLH35 isoform X1
TrEMBLA0A2K1ZYE41e-177A0A2K1ZYE4_POPTR; Uncharacterized protein
STRINGPOPTR_0006s07430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3935422
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.19e-54bHLH family protein