PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G074900.4
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 228aa    MW: 25579.5 Da    PI: 8.7972
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G074900.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-133678754
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          Er+RR+r+N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  Potri.006G074900.4 36 VSERNRRKRLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 78
                        57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.6852978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-173093IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.60E-123283No hitNo description
SMARTSM003531.2E-143584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-163593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-113678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550219.61E-5149218No hitNo description
CDDcd048730.00266152215No hitNo description
PROSITE profilePS516718.627153225IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MRSLIGSWAI DEAFSGYYDS SSPDGAASSA ASKNIVSERN RRKRLNERLF ALRAVVPNIS  60
KMDKASIIKD AIDYIQELHK QERRIQAEIL ELESGKLKKD PGVDVFEQEL PALLRSKKKK  120
IDDRFCDFGG SKNFSRIELL ELRVAYMGEK TLLVSLTCSK RTDTMVKLCE VFESLRVKII  180
TANITTVSGR VLKTVFIEAD EEEKDNLKTR IETAIAALND PLSPMSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-143494969Transcription factor MYC2
5gnj_B6e-143494969Transcription factor MYC2
5gnj_E6e-143494969Transcription factor MYC2
5gnj_F6e-143494969Transcription factor MYC2
5gnj_G6e-143494969Transcription factor MYC2
5gnj_I6e-143494969Transcription factor MYC2
5gnj_M6e-143494969Transcription factor MYC2
5gnj_N6e-143494969Transcription factor MYC2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G074900.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459928.11e-165transcription factor bHLH35 isoform X1
SwissprotQ2HIV95e-84BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2K1ZYF21e-164A0A2K1ZYF2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s07440.11e-129(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-65bHLH family protein