PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G074900.5
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 167aa    MW: 18880 Da    PI: 6.0506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G074900.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000462173954
                        TCHHHHHHHHHHHHHH CS
                 HLH 39 sKaeiLekAveYIksL 54
                        +Ka+i + A++YI++L
  Potri.006G074900.5  2 DKASIIKDAIDYIQEL 17
                        8*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-5132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-7132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.626117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550214.58E-588157No hitNo description
CDDcd048730.0028291154No hitNo description
PROSITE profilePS516718.62792164IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MDKASIIKDA IDYIQELHKQ ERRIQAEILE LESGKLKKDP GVDVFEQELP ALLRSKKKKI  60
DDRFCDFGGS KNFSRIELLE LRVAYMGEKT LLVSLTCSKR TDTMVKLCEV FESLRVKIIT  120
ANITTVSGRV LKTVFIEADE EEKDNLKTRI ETAIAALNDP LSPMSM*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G074900.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459928.11e-117transcription factor bHLH35 isoform X1
RefseqXP_024459929.11e-117transcription factor bHLH35 isoform X2
SwissprotQ2HIV94e-48BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2K1ZYF21e-115A0A2K1ZYF2_POPTR; Uncharacterized protein
TrEMBLA0A2K1ZYF31e-115A0A2K1ZYF3_POPTR; Uncharacterized protein
STRINGPOPTR_0006s07440.11e-93(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-50bHLH family protein