PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G080300.1
Common NamePOPTR_0006s08000g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 179aa    MW: 19414 Da    PI: 8.4583
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G080300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-182271356
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                        y+GVr +  +g+Wv+eIr+p+    + +r++lg+++ +e+Aa+a++aa  +++ge
  Potri.006G080300.1 22 YRGVRMRT-WGKWVSEIRVPK----TgQRIWLGSYDAPEKAARAYDAAQYCIRGE 71
                        9****998.**********95....35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.79E-202179IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-282179IPR001471AP2/ERF domain
PROSITE profilePS5103221.2592178IPR001471AP2/ERF domain
SMARTSM003802.8E-312184IPR001471AP2/ERF domain
PRINTSPR003673.6E-92233IPR001471AP2/ERF domain
PfamPF008475.8E-112271IPR001471AP2/ERF domain
CDDcd000182.13E-282279No hitNo description
PRINTSPR003673.6E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MDPCKSSAPP KKVRQGRNSG TYRGVRMRTW GKWVSEIRVP KTGQRIWLGS YDAPEKAARA  60
YDAAQYCIRG ERGQFNFPAE RRPQLPSGPV DALSKKEIKA IAFNFASSNA SSVSPSVITP  120
VEMVEPSLPN LQVSSATGNA GNVEGYVPAS ASVPDLCSID NLQLDDLLML DIEWIDSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-171680974Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00463DAPTransfer from AT4G31060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G080300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458701.11e-124ethylene-responsive transcription factor ERF015
SwissprotQ6NLD52e-56ERF15_ARATH; Ethylene-responsive transcription factor ERF015
TrEMBLB9HBC81e-128B9HBC8_POPTR; ERF family protein
STRINGPOPTR_0006s08000.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154791011
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.17e-45ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]