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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Potri.006G081100.2 |
| Common Name | POPTR_0006s08100g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
C3H |
| Protein Properties |
Length: 397aa MW: 42358.4 Da PI: 9.6662 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.006G081100.2 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 38.6 | 1.8e-12 | 4 | 27 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k e+Cr+f+r G C+yGdrCkF H+
Potri.006G081100.2 4 KKEPCRNFQR-GSCQYGDRCKFLHV 27
99********.*************7 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 397 aa
Download sequence Send
to blast |
MYKKKEPCRN FQRGSCQYGD RCKFLHVTPQ QPPKSSNNPF GFGNQQTPNN NNNNSFGFGN 60
RQQQQRPNSP FGSAPNNSAN NRPQQFKPFE NKWSRGASAP SSRQRPDSQP ANHNCADPDS 120
CKRLIAEDFE HERPLWKLTC YGHLRDGPCD IIGDVSYEEL RAAAYDDYKR GLSLQSIVEK 180
ERNLLNSKLI EFNNLLHNPS IAPSKPAPAG QSPFFRATAN ATPAAAQNTA PPSVSSFGQL 240
GTSLNMRSAT PSNNAFGQPS QPLTAFGVSP SAPSNNVFGQ SNLPSNSSQT VSAFGTNNFL 300
SANASNSSQT SSAFGTTSFP SINAGLLGSQ LPNQALGNSF SPNIAGFGNS GVNSIQNISS 360
SPLSMQNPSI HPLSISNGLN SAFNAAGQAT TNVQPV*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in the adaxial face of the collar, nodes and the basal region of elongating internodes. {ECO:0000269|PubMed:18953406}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds double-stranded DNA and the single-stranded RNA polymers poly(rA), poly(rU) and poly(rG), but not poly(rC). Mediates optimal plant architecture through brassinosteroid (BR) signaling. May act as a negative regulator in sterol homeostasis (PubMed:18953406). Acts as negative regulator of BR signaling. Binds to the specific DNA sequence 5'-CTCGC-3' of BZR1 promoter and negatively regulates BZR1. Acts as an antagonistic transcription factor of BZR1 to attenuate the BR signaling pathway and regulate leaf bending. Represses the expression of ILI1, and activates that of IBH1 to balance the regulation activity of BZR1 (PubMed:22570626). {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by 24-epibrassinolide. {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |
