PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.006G102600.1

Common Name

POPTR_0006s10350g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 166aa MW: 18326.2 Da PI: 7.1593

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.006G102600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.2	1.9e-10	46	86	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++l+P +K++ +++Le+A++Y+k L Potri.006G102600.1 46 ARERRHRISDRFKILQSLVPGG-----TKMDTVSMLEEAINYVKFL 86 699***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.745	37	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.37E-14	42	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-12	43	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.12E-14	43	90	No hit	No description
SMART	SM00353	4.3E-13	43	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.5E-8	46	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MDYHSTTNPS SSGSSSAPKN GREKRTGGKK SNGGVKLSTD PQSVAARERR HRISDRFKIL 60 QSLVPGGTKM DTVSMLEEAI NYVKFLKNQI LLHQTIMNSV DDERSLDYHL PAGSASLPTE 120 QPSYLDSNLA SVVHPSSSLP CPDSYFQADE NYTHYDAFDS KNYYF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.006G102600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002309150.2	1e-120	transcription factor bHLH140
TrEMBL	B9HCY8	1e-119	B9HCY8_POPTR; BHLH family protein
STRING	POPTR_0006s10350.1	1e-120	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7167	28	46
Representative plant	OGRP8941	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	4e-30	APRATAXIN-like

Link Out ? help Back to Top
Phytozome	Potri.006G102600.1
Entrez Gene	7468065