PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G108300.2
Common NamePOPTR_0006s10880g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 881aa    MW: 95767.7 Da    PI: 6.7963
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G108300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-18288388199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++ 
  Potri.006G108300.2 288 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMKLQAGDTVTFSRMD- 376
                         99**************************555567778***************9989999999***9.********************876. PP

                         SEE..EEEEE-S CS
                  B3  88 sefelvvkvfrk 99 
                          e++lv++++++
  Potri.006G108300.2 377 PEGKLVMGFRKA 388
                         777788877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-31282399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-20285388IPR015300DNA-binding pseudobarrel domain
CDDcd100173.43E-23286387No hitNo description
PfamPF023624.0E-16288388IPR003340B3 DNA binding domain
SMARTSM010192.4E-21288389IPR003340B3 DNA binding domain
PROSITE profilePS5086311.18288389IPR003340B3 DNA binding domain
PROSITE profilePS5105013.76554604IPR011124Zinc finger, CW-type
PfamPF074961.6E-10559601IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MASSSSSIKS CMNATCGVST SNSGGWRKGW ALRSGDFAIL CDNCGSAYEQ SIFCEVFHSK  60
DSGWRECTSC SKRLHCGCIA SRSLLELLDG GGVNCTSCSR TSGVGPMNGD EKPNGFGKPK  120
VDTVGELHSA SADSQLAAET KLMQLGNCID GIGTRNLLQL QSDETNGTVT AAKDLYESLA  180
QTNLSMSLGS SLGNPNLFPG GVVDERVPSK ASSPLQQGPR SRHLLPKPPK SALSMDANAG  240
MVSQIRVARP PAEGRGRNQL LPRYWPRITD QELQQISGDP NSTIVPLFEK VLSASDAGRI  300
GRLVLPKACA EAYFPPISQP EGLPLRIQDV KGKEWVFQFR FWPNNNSRMY VLEGVTPCIQ  360
SMKLQAGDTV TFSRMDPEGK LVMGFRKASN SIAMQQDTQP SAIPNGVPSS ESYFSGVFEN  420
LPIISGYSGL LQSLKGSTDT HLSALSKHLH SASGDISWNK SEKQEDRTRD GLLLPSLMVP  480
ERKRTRNIGS KSKRLLIDSL DAFELKLTWE EAQDLLRPAP SVKPSIVTIE DHDFEEYEEP  540
PVFGKRSIFI VRSIGGQEQW AQCDSCSKWR RLPVDVLLPP KWTCVDNAWD QSRCSCSAPD  600
ELAPRELENL LRLNKDFKKR KITSSHQPAQ ELESSGLDAL ANAAILGDVG EQSTTAVVAT  660
TTKHPRHRPG CSCIVCIQPP SGKGKHKPTC TCNVCMTVKR RFKTLMMRKK KRQSEREAEI  720
AQKTQHLVGP KDEAEIESSS KLASIPRDPS DNEARSGNEL ESKGQSNNLS NKLADSGKGH  780
LDLNCHPDRE EDSQAGLSRM SMTSFLQVAT LPLDTYLKQN GLASLSEQQA SSASHVPPQT  840
GENEGKINDD CQPATAAPEQ ESGGEENDEP GPDQSQNDPV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-692663952131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1698709KRRFKTLMMRKK
2698711KRRFKTLMMRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G108300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ9020511e-120HQ902051.2 Populus laurifolia MORC family ATPase (VP) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460273.10.0B3 domain-containing transcription repressor VAL2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2K2A0770.0A0A2K2A077_POPTR; Uncharacterized protein
STRINGPOPTR_0006s10880.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]