PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G114200.1
Common NamePOPTR_0006s11500g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 848aa    MW: 91841.2 Da    PI: 6.4775
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G114200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS417.71e-1274658222374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lLl+cAeavs++++e+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y++lp+ ++s  ++++ ++a+++f+ +sP++k
  Potri.006G114200.1 465 LTLLLQCAEAVSADNFEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYATLPSMPQS--HTQKMASAFQVFNGISPFVK 553
                         579************************************************************999998..5899999************* PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         fsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s+e+le+tg+rL++fA++lg+pfef + va
  Potri.006G114200.1 554 FSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----STEALEATGKRLSDFANKLGLPFEFIP-VA 639
                         *********************************************************....9**************************.7* PP

                GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         +++ +l++e+L+v++ Ea+aV++    h+l+d ++s ++    +L l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a+
  Potri.006G114200.1 640 EKVGNLNPERLNVSKSEAVAVHWLQ--HSLYDVTGSDTN----MLYLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAVHYYSALFDSLGAS 723
                         ************************9..999999999999....**********************.899********************** PP

                GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                         +++eseer++vE++ll+rei+nv+a  g +r  + + +++Wre+l+++GFk ++l  +aa+qa+lll +++sdgy++ e++g+l lgWkd 
  Potri.006G114200.1 724 YGEESEERHVVEQQLLSREIRNVLAVGGPSRSGDVK-FHNWREKLQQSGFKCISLAGNAANQANLLLGMFPSDGYTLAEDKGTLKLGWKDL 813
                         ******************************888877.****************************************************** PP

                GRAS 366 pLvsvSaWr 374
                          L+++SaWr
  Potri.006G114200.1 814 CLLTASAWR 822
                         ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.687438802IPR005202Transcription factor GRAS
PfamPF035143.5E-125465822IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MAAAASYLLG RLSNDNISIN NITIDNSGGS CSNIDNASTA SLTSASLLTN GGNQATTIPV  60
IEAATGRMVR KRMASEMMEV QSTMTPLNQR LSRGNTNVYS LSISDNNNDD VIGMTRGIGA  120
SSFTSCSNNN INPNNLNPIL YPLLNYSTMT SMLPSSTNLT AITSAGSASV SVSGFLSSTP  180
STNLATSCND NQSQLPAVCG FSGLPLFPPE RERNIVRSNA VPPPGLITTS SASTPTPPSM  240
EDAAPATAWI DGIIKDLLHS STNVSVPQLI QNVREIIYPC NPNLASLLEY RLRSLTDPII  300
PANIYPVERR RNKEAAAVPL PFQRNYIQGH APSGLSLDLD HVSNSALPPV SSHVVSHYSN  360
WGPTPPLICQ PNIQQQHQQP QAHLVHDQQQ QESPSSTSNV TPTILALNQG HPPQQAQDQQ  420
QEKSSSAETQ VASSTPPPSS SVAASRDKKE EMRQQKRNEE GLHLLTLLLQ CAEAVSADNF  480
EEANKMLLEI SELSTPFGTS AQRVAAYFSE AMSARLVSSC LGIYATLPSM PQSHTQKMAS  540
AFQVFNGISP FVKFSHFTAN QAIQEAFERE ERVHIIDLDI MQGLQWPGLF HILASRPGGP  600
PFVRLTGLGT STEALEATGK RLSDFANKLG LPFEFIPVAE KVGNLNPERL NVSKSEAVAV  660
HWLQHSLYDV TGSDTNMLYL LQRLAPKVVT VVEQDLSHAG SFLGRFVEAV HYYSALFDSL  720
GASYGEESEE RHVVEQQLLS REIRNVLAVG GPSRSGDVKF HNWREKLQQS GFKCISLAGN  780
AANQANLLLG MFPSDGYTLA EDKGTLKLGW KDLCLLTASA WRPFHVSIET ATTTINHHHH  840
HHRFVTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04488233380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G114200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2324961e-63CU232496.1 Populus EST from severe drought-stressed opposite wood.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381294.10.0protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A385JI690.0A0A385JI69_POPTO; Shoot gravitropism 1
TrEMBLB9MTQ90.0B9MTQ9_POPTR; Uncharacterized protein
STRINGPOPTR_0006s11500.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Representative plantOGRP21831437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein