PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G117500.1
Common NamePOPTR_0006s11870g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 484aa    MW: 55719.3 Da    PI: 5.4032
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G117500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.93.1e-2492191186
            trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 
                         +Wt+++v++Li a+ +++++++++              +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ ++++++
  Potri.006G117500.1  92 KWTDNMVRLLIMAVFYIGDEVGSEVsdpigkkkpgglaQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVE 182
                         7**************99999997533455556777777**********************************************559**** PP

            trihelix  78 tcpyfdqle 86 
                         + +++d ++
  Potri.006G117500.1 183 NQSLLDTMD 191
                         *****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-2190216No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MGSGILGLEL PLHQQQNPQN PHHLQHPQIV AYAHHESDHH QHSQQSAKHA YPFASTKPKQ  60
LSPLSNEDEP SFTGDDSTTD GNRKISPWQR MKWTDNMVRL LIMAVFYIGD EVGSEVSDPI  120
GKKKPGGLAQ KKGKWKSVSR AMMEKGFYVS PQQCEDKFND LNKRYKRVND ILGKGTACRV  180
VENQSLLDTM DLSPKMKDEV RKLLNSKHLF FREMCAYHNS CGHAGVASGI NNSPEMATDP  240
SHAQHQQATQ QQQQYQRCSH STENAQVVTN SRTETEGSKM AKMARNEEDD HDESEEDEDD  300
YVEDEEEEDD DDERDDDEED YEENEDEAVE GNSRHQNGHG HGDEDDHDEK SSRKRPRKEV  360
FSATSSLMQQ LNGEIMNVLR DGAKSSWEKN QWMKLKLMQL EEQQVNYQCQ AFELEKQRLK  420
WVRFSSKKER EMERAKLENE RKRLENERMV LTVRKKELEL LDTTHQQQQL PSNKRSDPSS  480
IAG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G117500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458271.10.046 kDa FK506-binding nuclear protein isoform X2
TrEMBLA0A2K2A0Q80.0A0A2K2A0Q8_POPTR; Uncharacterized protein
STRINGPOPTR_0006s11870.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Representative plantOGRP9974610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.17e-79sequence-specific DNA binding transcription factors