PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G121600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 228aa    MW: 24952.1 Da    PI: 8.5952
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G121600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013138160123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  Fs+   L  H+r+H
  Potri.006G121600.1 138 HECSICGAEFSSGQALGGHMRRH 160
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.07E-6135161No hitNo description
Gene3DG3DSA:3.30.160.607.1E-4136160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.3E-13137162IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743138160IPR007087Zinc finger, C2H2
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGSKELKQII KGKRTKRPGP SLPLTLAMTS SSSSNAGESE GELDQRIYNN SSSSPGPSTS  60
FEFMERTGEE EDMANCLIFL AQDNQNYKIL VKLVAIATST TTTNINKDAG LYVYQCKTCD  120
RLNNRVLCSP NVKSNKVHEC SICGAEFSSG QALGGHMRRH RAFAAATSTT TITTTTTSTS  180
IMSLGRVNGL DHESQESKKP RNNLQLDLNL LAPKDDLLEP KFHFALRN
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G121600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428462.22e-57zinc finger protein ZAT5
RefseqXP_006493540.12e-57zinc finger protein ZAT5-like
TrEMBLA0A2K2A0Z51e-168A0A2K2A0Z5_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0006s12340.13e-92(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.14e-20C2H2 family protein